Forward thinking Biomedical research advances our global impact on animal biology and human health.
Faculty and Staff
Selected Peer-Reviewed Articles
Shariat, N.W., K.M. Feye, A.K. Richards, B. Booher, Z. Flores, P.M. Rubinelli, E.G. Olson, and S.C. Ricke. 2020. Incidence of Salmonella serovars isolated from commercial animal feed mills in the United States and serovar identification using CRISPR analysis. J. Appl. Microbiol. doi:10.1111/jam.14933.
Feye, K., C.L. Swaggerty, M.H. Kogut, S.C. Ricke, A. Piva, and E. Grilli. 2020. The biological effects of microencapsulated organic acids and botanicals induces tissue-specific and dose-dependent changes to the Gallus gallus microbiota. BMC Microbiol. 20:332. https://doi.org/10.1186/s12866-020-02001-4. (1, 5, 7)
Ricke, S.C., S.I. Lee, S.A. Kim, S.H. Park, and Z. Shi, 2020. Prebiotics and the poultry gastrointestinal tract microbiome. Poultry Sci. 99: 670-677.
Feye, K.M., D.R.Thompson, M.J. Rothrock, M.H. Kogut, and S.C. Ricke. 2020. Poultry processing and the application of microbiome mapping. Poultry Sci. 99: 678-688.
Horton MV, Johnson CJ, Kernien JF, Patel TD, Lam BC, Cheong JZA, Meudt JJ, Shanmuganayagam D, Kalan LR, Nett JE. Candida auris Forms High-Burden Biofilms in Skin Niche Conditions and on Porcine Skin. mSphere. 2020 Jan 22;5(1). doi: 10.1128/mSphere.00910-19. [Link]
Cheng AA, Li W, Hernandez LL. Transcriptomic analysis investigating the interaction between peripheral serotonin and high fat diet feeding on mammary gene expression in mid-lactation mice. 2020. Physiol Genomics. 52(1):47-55. doi: 10.1152/physiolgenomics.00073.2019. [Epub ahead of print] PubMed PMID: 31814535.
Deer EM, Welch B, Hernandez LL, Seeley RJ, and Grayson BE. 2020. Nutrient and hormone composition of milk is altered in rodent dams post-bariatric surgery. J. Dev. Orig. Health Dis. 11(1):71-77. Doi: 10.1017/S2040174419000424. Epub. Ahead of print. PMID:31397254. PMCID:PMC6934892.
Gullickson ER, Krueger CG, Birmingham A, Maranan M, Reed JD. Development of a cranberry standard for quantification of insoluble cranberry (vaccinium macrocarpon ait.) proanthocyanidins. Journal of agricultural and food chemistry. 2020; 68:2900-2905
Arowolo, F. K., X. Yang, M. E. Blaser, A. M. Nicholson, E. Hosokawa, J. R. Booth, C. T. Jobsis, R. L. Russell, J. J. Meudt, J. L. Reichert, T. D. Crenshaw, M. P. Richards, and D. Shanmuganayagam. 2020. Presence of lipid oxidation products in swine diet lowers pork quality and stability during storage. Meat Sci 160:107946. doi: 10.1016/j.meatsci.2019.107946
Tricaricio, J., E. Kebreab, and M. A. Wattiaux. 2020. Sustainability of dairy production and consumption in low-income countries with emphasis on productivity and environmental impact. J. Dairy Sci. (In press).
Schachtschneider KM, Jungersen G, Schook LB, Shanmuganayagam D. Editorial: “Humanized” Large Animal Cancer Models: Accelerating Time and Effectiveness of Clinical Trials. Frontiers in Oncology 2019; 9:793. doi: 10.3389/fonc.2019.00793. [Link]
Weaver SR, Xie C, Charles JF, Hernandez LL. 2019. In utero and lactation exposure to the selective serotonin reuptake inhibitor fluoxetine compromises pup bones at weaning. Sci. rep. 9(1):238. PMID:30659249.
Hanfang Cai, Chaoqun Zhu, Zhilong Chen, Rexiati Maimaiti, Mingming Sun, Richard J. McCormick, Xianyong Lan, Hong Chen and Wei Guo. Angiotensin II influences pre-mRNA splicing regulation by enhancing RBM20 transcription through activation of the MAPK/ELK1 signaling pathway. Int. J Mol. Sci. 2019. 20(20): E5090. PMID: 31614708.
Qiurong Wang, Chaoqun Zhu., Mingming Sun., Rexiati Maimaiti., Stephen P. Ford, Peter W. Nathanielsz, Jun Ren and Wei Guo. Maternal obesity impairs fetal cardiomyocytes contractile function in sheep. FASEB J. 2019; 33(2): 2587-2598. PMID: 30289749.
Mingming Sun, Ying Tan, Maimaiti Rexiati, Maolong Dong, and Wei Guo. Obesity is as a Common Soil for Premature Cardiac Aging and Heart Diseases – Role of Autophagy. Biochimica et biophysica acta Mol Basis Dis. 2019, 1865(7): 1898-1904. PMID: 31109454.
Alfaro-Viquez E, Esquivel-Alvarado D, Madrigal-Carballo S, Krueger CG, Reed JD. Proanthocyanidin-chitosan composite nanoparticles prevent bacterial invasion and colonization of gut epithelial cells by extra-intestinal pathogenic escherichia coli. Int J Biol Macromol. 2019;135:630-636.
Ricke, S.C. 2018. Impact of prebiotics on poultry production and food safety. Yale Journal of Biology and Medicine. 91: 151-159.
Ricke, S.C., S.A. Kim, and S. H. Park. 2018. Molecular-based identification and detection of Salmonella in food production systems: Current perspectives. J. Appl. Microbiol. 125: 313-327.
Miranpuri GS, Schomberg DT, Stan P, Chopra A, Buttar S, Wood A, Radzin A, Meudt JJ, Resnick DK, Shanmuganayagam D. Comparative Morphometry of the Wisconsin Miniature Swine™ Thoracic Spine for Modeling Human Spine in Translational Spinal Cord Injury Research. Annals of Neurosciences 2018; 25(4): 210-218. doi: 10.1159/000488022. [Link]
Lin Z, Guo F, Gregorich ZR, Sun R, Zhang H, Hu Y, Shanmuganayagam D, Ge Y. Comprehensive Characterization of Swine Cardiac Troponin T Proteoforms by Top-Down Mass Spectrometry. Journal of The American Society for Mass Spectrometry 2018; 29 (6):1284-1294. doi: 10.1007/s13361-018-1925-y.
Weaver SR, Fricke HP, Xie C, Aiello RJ, Charles JF, Hernandez LL. 2018. Peripartum dietary supplementation of a small molecule inhibitor of tryptophan hydroxylase 1 compromises infant, but no maternal, bone. Am. J. Endocrinol. Metab. Oct 23. Epub ahead of print. PMID: 30351987.
Weaver SR, HP Fricke, C Xie, RJ Lipinski, CM Vezina, JF Charles, and LL Hernandez. 2018. Peripartum fluoxetine reduces maternal trabecular bone after weaning and elevates mammary gland serotonin and PTHrP. Endocrinology. 159(8):2850-2862. PMID:29893816.
Weaver SR and LL Hernandez. (2018). Could use of selective serotonin reuptake inhibitors during lactation cause persistent effects on maternal bone? J. Mammary Gland Biol. Neoplasia. Epub ahead of print. Mar 30. PMID:29603039.
Lin Z., Wei LM., Cai W., Zhu YL., Tucholski T., Mitchell SD., Guo W., Ford PF., Diffee GM and Ying G. Simultaneous Quantification of Protein Expression and Modifications by Top-down Targeted Proteomics: A Case of Sarcomeric Subproteome. Molecular and Cellular Proteomics. 2018.18(3): 594-605. PMID: 30591534.
Chen Z., Maimaiti R., Zhu C., Cai H., Stern A., Mozdziak P., Ge Y., Ford SP., Nathanielsz PW., and Guo W. Z-band and M-band titin splicing and regulation by RBM20 in striated muscles. J Cell Biochem., 2018, 119(12): 9986-9996. PMID: 30133019.
Wei Guo, Chaoqun Zhu, Zhiyong Yin, Qiurong Wang, Mingming Sun, Huojun Cao and Marion L. Greaser. Splicing factor Rbm20 regulates transcriptional network of titin associated and calcium handling genes in the heart. Int J Biol Sci; 2018. 14(4): 369-380. PMID: 29725258.
Zhilong Chen, Jiangping Song, Liang Chen, Hanfang Cai, Chaoqun Zhu, Mingming Sun, Allysa Stern, Paul Mozdziak, Ying Ge, Warrie J. Means and Wei Guo. Characterization of TTN novex splicing variants across species and the role of RBM20 in novex specific exon splicing. Genes (Basel). 2018. 9(2): 86-100. PMID: 29438341.
Halanski, M. A., B. Hildahl, L. A. Amundson, E. Leiferman, A. Gendron-Fitzpatrick, R. Chaudhary, H. M. Hartwig-Stokes, R. McCabe, R. Lenhart, M.Chin, J. Birstler, T.D. Crenshaw. 2018. Maternal diets deficient in vitamin D increase risk of kyphosis in offspring. A novel kyphotic porcine model. J. Bone Joint Surg. 100:406-415. (doi.org/10.2106/JBJS.17.00182.
Collins, C., M. Boyer, T. D. Crenshaw, and H. L. Ploeg. 2018. Design of a surrogate for evaluation of methods to predict bone bending stiffness. Journal of the Mechanical Behavior of Biomedical Materials 88:346-351. https://doi.org/10.1016/j.jmbbm.2018.08.046
Bekiares N, Krueger CG, Meudt JJ, Shanmuganayagam D, Reed JD. Effect of sweetened dried cranberry consumption on urinary proteome and fecal microbiome in healthy human subjects. Omics: a journal of integrative biology. 2018;22:145-153. PMCID: 5810433
Barone CD, Zajac AM, Manzi-Smith LA, Howell AB, Reed JD, Krueger CG, Petersson KH. Anthelmintic efficacy of cranberry vine extracts on ovine haemonchus contortus. Veterinary parasitology. 2018;253:122-129. PMCID: 6056019
Alfaro-Viquez E, Esquivel-Alvarado D, Madrigal-Carballo S, Krueger CG, Reed JD. Cranberry proanthocyanidin-chitosan hybrid nanoparticles as a potential inhibitor of extra-intestinal pathogenic escherichia coli invasion of gut epithelial cells. Int J Biol Macromol. 2018;111:415-420.
Kim, S.A., S.H. Park, S.I. Lee, C.M. Owens, and S.C. Ricke. 2017. Assessment of chicken carcass microbiome responses during processing in the presence of commercial antimicrobials using a next generation sequencing approach. Scientific Repts. 7:43354. doi: 10.1038/srep43354.
Park, S.H., S.I. Lee, S.A. Kim, K. Christensen, and S.C. Ricke. 2017. Comparison of antibiotic supplementation versus a yeast-based prebiotic on the cecal microbiome of commercial broilers. PLoS ONE 12(8): e0182805. https://doi.org/10.1371/ journal.pone.0182805.
Ricke, S.C.2017. Insights and challenges of Salmonella infections in laying hens. Current Opinions in Food Science 18: 43-49.
Park, S.H., S.A. Kim, P.M. Rubinelli, S.M. Roto,and S.C. Ricke. 2017. Microbial compositional changes in broiler chicken cecal contents from birds challenged with different Salmonella vaccine candidate strains. Vaccine 35: 3204-3208.
Rubinelli, P.M., S.A. Kim, S.H. Park, S.M. Roto*, N.J. Nealon, E.P. Ryan, and S.C. Ricke. 2017. Differential effects of rice bran cultivars to limit Salmonella Typhimurium in chicken cecal in vitro incubations and impact on the cecal microbiome and metabolome. PLoS ONE 12(9): e0185002. doi.org/10.137/journal.pone0185002
Bekiares NA, Chen AS, Shanmuganayagam D, Meyers AD, Crenshaw TD, Krueger CG, Reed JD. Effect of Caloric Restriction on Metabolic Dysfunction of Young Rapacz Familial Hypercholesterolemic Swine (Sus scrofa). Comparative Medicine 2017; 67 (6):1-10. [Link]
Weaver SR, NJ Jury, KA, Gregerson, ND Horseman, LL Hernandez. (2017). Characterization of mammary specific disruptions for Tph1 and Lrp5 during murine lactation. Sci. Rep. 9(7):15155. PMID: 29123193.
Zhu C, Yin Z, Tan B, Guo W. Insulin regulates titin pre-mRNA splicing through the PI3K-Akt-mTOR kinase axis in a RBM20-dependent manner. Biochimica et biophysica acta Mol Basis Dis. 2017, 1863(9): 2363-2371. PMID: 28676430.
Bromage, T. G., Y. Idaghdour, R. S. Lacruz, T. D. Crenshaw, O. Ovsiy, B. Rotter, K. Hoffmeier, F. Schrenk. 2016. The Swine Metabolome Chronicles “Many Days” Biological Timing and Functions Linked to Growth. PLOS One. 11:1-19. (doi:10.1371/journal.pone.0145919).
Williams AR, Klaver EJ, Laan LC, Ramsay A, Fryganas C, Difborg R, Kringel H, Reed JD, Mueller-Harvey I, Skov S, van Die I, Thamsborg SM. Co-operative suppression of inflammatory responses in human dendritic cells by plant proanthocyanidins and products from the parasitic nematode trichuris suis. Immunology. 2017;150:312-328. PMCID: 5290246
Carballo SM, Haas L, Krueger CG, Reed JD. Cranberry proanthocyanidins – protein complexes for macrophage activation. Food & function. 2017;8:3374-3382.
Bekiares NA, Chen AS, Shanmuganayagam D, Meyers AD, Crenshaw TD, Krueger CG, Reed JD. Effect of caloric restriction on metabolic dysfunction of young rapacz familial hypercholesterolemic swine (sus scrofa). Comparative medicine. 2017;67:508-517. PMCID: 5713166
Grunwald, EW, Tatiyaborworntham, N, Faustman, C, Richards, MP. (2017). Effect of 4-hydroxy-2-nonenal on myoglobin-mediated lipid oxidation when varying histidine content and hemin affinity. Food Chem. 227, 289-297.
Schomberg D, Miranpuri G. Chopra A, Patel K, Meudt JJ, Tellez A, Resnick DK, Shanmuganayagam D. Translational relevance of swine models of spinal cord injury. Journal of Neurotrauma 2016; 34(3):541-551. doi: 10.1089/neu.2016.4567. [Link]
Tellez A, Dillon KN, Hubbard B, Brady DA, Shanmuganayagam D, Rousselle SD. A Perspective on the Delivery of Renal Denervation Therapy Based on Preclinical Data. JACC: Basic to Translational Science 2016; 1 (4) 288-295. [Link]
Schomberg D, Tellez A, Meudt JJ, Brady D, Dillon KN, Arowolo FK, Wicks J, Rousselle SD, Shanmuganayagam D. Miniature swine for preclinical modeling of complexities of human disease for translational scientific discovery and accelerated development of therapies and medical devices. Toxicologic Pathology 2016; 44(3) 299-314. [Link]
Halanski MA, S. Abrams, R. Lenhart, E. Leiferman, T. Kaiser, E. Pierce, R.R. Franklin, D. Opel, K. J. Noonan, T. D. Crenshaw. 2016.Tendon transfer to unossified bone in a porcine model: potential implications for early tibialis anterior tendon transfers in children with clubfeet. J. Child. Orthop. 10(6):705-714. Epub 2016 Nov 30. PMID:27900541
Polewski MA, Krueger CG, Reed JD, Leyer G. Ability of cranberry proanthocyanidins in combination with a probiotic formulation to inhibit in vitro invasion of gut epithelial cells by extra-intestinal pathogenic e. Coli. J Funct Foods. 2016;25:123-134.
Madrigal-Carballo S, Haas L, Vestling M, Krueger CG, Reed JD. Non-covalent pomegranate (punica granatum) hydrolyzable tannin-protein complexes modulate antigen uptake, processing and presentation by a t-cell hybridoma line co-cultured with murine peritoneal macrophages. International journal of food sciences and nutrition. 2016:1-9.
Krueger CG, Chesmore N, Chen X, Parker J, Khoo C, Marais JPJ, Shanmuganayagam D, Crump P, Reed JD. Critical reevaluation of the 4-(dimethylamino)cinnamaldehyde assay: Cranberry proanthocyanidin standard is superior to procyanidin a2 dimer for accurate quantification of proanthocyanidins in cranberry products. J Funct Foods. 2016;22:13-19.
Blumberg JB, Basu A, Krueger CG, Lila MA, Neto CC, Novotny JA, Reed JD, Rodriguez-Mateos A, Toner CD. Impact of cranberries on gut microbiota and cardiometabolic health: Proceedings of the cranberry health research conference 2015. Advances in nutrition. 2016;7:759S-770S. PMCID: 4942875
Porras AM, Shanmuganayagam D, Meudt JJ, Krueger CG, Hacker TA, Rahko PS, Reed JD, Masters KS. Development of aortic valve disease in familial hypercholesterolemic swine: Implications for elucidating disease etiology. Journal of the American Heart Association 2015;4(10):e002254. doi: 10.1161/JAHA.115.002254. [Link]
Polewski MA, Burhans MS, Zhao M, Colman RJ, Shanmuganayagam D, Lindstrom MJ, Ntambi JM, Anderson RM. Plasma diacylglycerol composition is a biomarker of metabolic syndrome onset in rhesus monkeys. Journal of Lipid Research 2015; 56(8):1461-70. [Link]
Wentland AL, Wieben O, Shanmuganayagam D, Krueger CG, Meudt JJ, Consigny D, Rivera L, McBride PE, Reed JD, Grist TM. Measurements of wall shear stress and aortic pulse wave velocity in swine with familial hypercholesterolemia. Journal of Magnetic Resonance Imaging 2015; 41(5):1475-85. [Link]
Chaoqun Zhu, Zhiyong Yin, Jun Ren, Richard J. McCormick, Stephen P. Ford and Wei Guo. RBM20 is an essential factor for thyroid hormone-regulated titin isoform transition. J Mol Cell Biol. 2015. 7(1): 88-90. PMID: 25573899.
Zhiyong Yin, Jun Ren and Wei Guo. Sarcomeric protein isoform transitions in cardiac muscle: A journey to heart failure. BBA-Molecular Basis of Disease. 2015. 1852(1): 47-52. PMID: 25446994.
Porras AM, Shanmuganayagam D, Meudt JJ, Krueger CG, Hacker TA, Rahko PS, Reed JD, Masters KS. Development of aortic valve disease in familial hypercholesterolemic swine: Implications for elucidating disease etiology. Journal of the American Heart Association. 2015;4:e002254. PMCID: 4845146
Feliciano RP, Krueger CG, Reed JD. Methods to determine effects of cranberry proanthocyanidins on extraintestinal infections: Relevance for urinary tract health. Molecular nutrition & food research. 2015;59:1292-1306.
Feliciano RP, Heintz JA, Krueger CG, Vestling MM, Reed JD. Fluorescent labeling of cranberry proanthocyanidins with 5-([4,6-dichlorotriazin-2-yl]amino)fluorescein (dtaf). Food chemistry. 2015;166:337-345.
Saengkerdsub, S. and S.C. Ricke.. 2014. Ecology and characteristics of methanogenic archaea in animals and humans. Crit. Revs. Microbiol. 40: 97–116.
Porras AM, Shanmuganayagam D, Meudt JJ, Krueger C, Reed JD, Masters KS. Gene expression profiling of valvular interstitial cells in Rapacz Familial Hypercholesterolemic swine. Genomic Data 2014; 2:261-263. [Link]
Johnson LL, Tekabe Y, Kollaros M, Eng G, Bhatia K, Li C, Krueger C, Shanmuganayagam D, Schmidt AM. Imaging RAGE expression in atherosclerotic plaques in hyperlipidemic pigs. European Journal of Nuclear Medicine and Molecular Imaging (EJNMMI) Research 2014; 4:26. [Link]
Foley, S.L., T.J. Johnson, S.C. Ricke, R. Nayakand J. Danzeisen. 2013. Salmonella pathogenicity and host adaptation in chicken-associated serovars. Microbiol. Mol. Biol. Revs. 77: 582-607.
Wei Guo, Jonathan M. Pleitner, Kurt W. Saupe and Marion L. Greaser. Pathophysiological defects and transcriptional profiling in the Rbm20-/- rat model. PLOS ONE. 2013. 8(12): e84281. PMID: 24367651.
Li S, Guo W, Dewey CN, Greaser ML. Rbm20 regulates titin alternative splicing as a splicing repressor. Nucleic Acids Res. 2013. 41(4): 2659-2672. PMID: 23307558 (Featured Article).
Sivalingam S, S. Y. Nakada, P. D. Sehgal, T. D. Crenshaw, and K. L. Penniston. 2013. Dietary hydroxyproline induced calcium oxalate lithiasis and associated renal injury in the porcine model. J Endourol. 27:1493-1498.
Richards, M.P. (2013). Redox reactions of myoglobin. Antioxid. Redox. Signal. 18, 2342-51
Ge W, Krueger CG, Weichmann AJ, Shanmuganayagam D, Varghese T. Displacement and strain estimation for evaluation of arterial wall stiffness using a familial hypercholesterolemia swine model of atherosclerosis. Medical Physics 2012; 39 (7): 4483-92. [Link]
Wei Guo, Schafer S, Greaser ML, Radke MH, Liss M, Govindarajan Gotthardt M et al. RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing. Nat. Med. 2012. 18: 766-773. PMID: 22466703 (Article received an Editorial in Nat. Med. (18: 660-661) and Dis. Model. Mech. (5:287).
Aiyangar, A. K., A. G. Au, T. D. Crenshaw, and H. L. Ploeg. 2010. Recovery of bone strength in young pigs from an induced short-term dietary calcium deficit followed by a calcium replete diet. Medical Engineering and Physics, 32: 1116-1123.
Selected Book Chapters
K. M. Feye, A. E. Powell, B. Booher, Z. Flores, P.M. Rubinelli, L.H. Calderwood, K.E. Richardson, P.A. Davis, R. Sellers, and S.C. Ricke. 2020. Isolation of Salmonella spp. from animal feed. Heide Schatten (Ed.) Salmonella Methods and Protocols (third edition) – Methods in Molecular Biology. Humana Press, Springer Science+Business Media LLC. pp. 7-16.
Rackerby, B., S.I. Lee, I. Moppert, S.C. Ricke, K.C. Jeong, and S.H. Park. 2019. Chapter 2. Application of whole genome sequencing to transposon mutants of Salmonella Heidelberg. pp. 17- 27. In: S.C. Ricke, S.H. Park, M.L. Davis. (Eds.) Microbial Transposon Mutagenesis: Methods and Applications. Springer Science, New York, NY.
Yang, Y., R. Chandrashekar, S.C. Ricke, and Y.M. Kwon. 2019. Chapter 13. Construction of DNA- barcode-tagged Salmonella strains. pp. 141 – 150. In: S.C. Ricke, S.H. Park, M.L. Davis. (Eds.) Microbial Transposon Mutagenesis: Methods and Applications. Springer Science, New York, NY.
Lee, S.I., S.A. Kim, S.H. Park, and S.C. Ricke. 2019. Molecular and new generation techniques for rapid detection of foodborne pathogens and characterization of microbial communities in poultry meat. pp. 235-260, In: Venkitanarayanan, K., S. Thakur, and S.C. Ricke (Eds.) Food Safety in Poultry Meat Production Springer Science, New York, NY.
Feye, K.M. and S.C. Ricke. 2019. Chapter 18. Establishment of a standardized 16S rDNA library preparation to enable analysis of microbiome in poultry processing using Illumina MiSeq platform. pp. 213-227. In: Arnaud Bridier (Ed.) Foodborne Bacterial Pathogens: Methods and Protocols. Methods in Molecular Biology. Springer Science, New York, NY.
Ricke, S.C., T.M. Dawoud, S. A. Kim, S.H. Park, and Y.M. Kwon 2018 Chapter 1. Salmonella cold stress response: Mechanisms and occurrence in foods. In: G.M. Gadd and S. Sariaslani (Eds.) Advances in Applied Microbiology 104: 1-38.
Ricke, S.C., J. Hacker, K. Yearkey, Z. Shi, S.H. Park, and C. Rainwater. 2017. Chap. 19. Unravelling food production microbiomes: Concepts and future directions. In: S.C. Ricke, G.G. Atungulu, S.H. Park, and C.E. Rainwater (Eds.) Food and Feed Safety Systems and Analysis. Elsevier Inc., San Diego, CA pp. 347-374.
Ricke, S.C. 2016. Chapter 16. Gastrointestinal ecology of Salmonella Enteritidis in laying hens and intervention by prebiotic and non-digestible carbohydrate dietary supplementation. In S.C. Ricke and R.K. Gast (Eds.). Producing Safe Eggs-The Microbial Ecology of Salmonella. Elsevier, Inc., San Diego, CA. pp. 323-345.
Ricke, S.C., T.M. Dawoud, and Y.M. Kwon. 2015. Chapter 4. Application of molecular methods for traceability of foodborne pathogens in food safety systems. In: S.C. Ricke, J.R. Donaldson, and C.A. Phillips (Eds.) Food Safety: Emerging Issues, Technologies and Systems. Elsevier, Oxford, UK, pp. 37-63.
Ricke, S.C. and R.K. Gast. 2014. Salmonella/Salmonella Enteritidis. In Encyclopedia of Food Microbiology- 2nd Edition, Vol. 3, pp. 343-348. Carl Batt and Mary Lou Tortello (Eds.), Elsevier, Ltd. Oxford, UK.
Ricke, S.C., O.-K. Koo, S. Foley, and R. Nayak. 2013. Chapter 7. Salmonella. In Guide to Foodborne Pathogens- 2nd Edition, R. Labbé and S. García (Eds.), Wiley-Blackwell, Oxford, UK, pp. 112-137.
Ricke, S.C., D.R. Jones, and R.K. Gast. 2013. Chapter 46. Eggs and egg products. In: Stephanie Doores, Yvonne Salfinger, and Mary Lou Tortorello (Eds.), Compendium of Methods for the Microbiological Examinations of Foods, 5th Edition. American Public Health Association, Washington, D.C. pp. 1-11.
Sofos, J.N., G. Flick, G.-J. Nychas, C.A. O’Bryan, S.C. Ricke, and P.G. Crandall.2013. Chapter 6. Meat, Poultry, and Seafood. In: M. P. Doyle, and R.L. Buchanan (Eds.), Food Microbiology-Fundamentals and Frontiers. American Society for Microbiology,4th Edition, Washington, D.C. pp. 111-167.
Ricke, S.C., O.K. Koo and J.T. Keeton. 2013. Chapter 34. Fermented meat, poultry, and fish products. In: M. P. Doyle, and R.L. Buchanan (Eds.), Food Microbiology-Fundamentals and Frontiers. American Society for Microbiology,4th Edition, Washington, D.C. pp. 857-880.
Shanmuganayagam D, Folts JD. Effect of polyphenolic flavonoid compounds on platelets. In: Packer L, ed. Methods in Enzymology (Volume 335): Flavonoids and Other Polyphenols: Academic Press; 2001: 369–380.
Selected Conference Proceedings
Steve Ricke: “Metabolism of the Microbiome” Symposium – The Future of the Poultry Gut-Health Nexus: Improving Food Safety. International Association for Food Protection Annual Virtual Meeting, Online, Oct. 26-28, 2020.
Steve Ricke: “Delivery of Bioinformatics in Poultry Processing” Poultry Science Annual Virtual Meeting, Online, July 20, 2020.
Steve Ricke: “Optimizing Feed Additives in Poultry Using Microbiome Analyses”, Symposium on Gut Health in Production of Food Animals, Hilton St. Louis at the Ballpark, St. Louis, MO, Nov. 5, 2019.
Steve Ricke: “Campylobacter Interventions and the Gastrointestinal Tract Microbiome”, Campylobacter, Helicobacter, and Related Organisms Conference- 2019, ICC Belfast, 2 Lanyon Place, Belfast, UK. Sept. 11, 2019.
Steve Ricke: “What is an Ideal Feed Additive for Broilers and How Can We Assess This? Keynote Presentation, 6th International Conference on Poultry Intestinal Health, Auditorium Del Massino Via Massimiliano Massino, 1 00144, Rome, Italy, Apr. 5, 2019.
Steve Ricke: “Application of Microbiome Sequencing in Food Processing Environments”, 16th Annual Conference of the Midsouth Computational Biology & Bioinformatics Society, McBios Informatics for Precision Medicine, UAB Informatics Institute. Hilton Birmingham at University of Alabama, Birmingham, AL, Mar. 29, 2019.
Mingming Sun, Yutong Jin, Chaoqun Zhu, Maimaiti Rexiati, Hanfang Cai, Martin Liss, Michael Gotthardt, Ying Ge and Wei Guo. Phosphorylation of RNA binding motif 20 is a novel target to reduce myocardial stiffness in diastolic dysfunction. 2019 Basic Cardiovascular Sciences (BCVS) meeting, Boston, MA, July 29th –August 1nd 2019.
Gullickson, E., Krueger, C., Polewski, M., Wedde, N., Reed, J. The Effect of Cranberry Proanthocyanidins on Gut Barrier Function and Inflammation in an In Vitro Cell Co-Culture Model. American Society for Parenteral and Enteral Nutrition 2019 Nutrition Science and Practice Conference, March 23 to 26, 2019, Phoenix AZ.
Polewski, M., Wedde, N., Krueger, C., and Reed, J. Evaluation of Cranberry Proanthocyanidins in an In Vitro Model of Gut Barrier Dysfunction. 8th Biennial Berry Health Benefits Symposium May 7th-9th, 2019, Portland, OR
Steve Ricke: “Review of Existing In – Feed Solutions to Reduce Antibiotic Dependence on Farm”, Symposium on Interventions to Reduce Antibiotic Resistance and Antibiotic Use in Animal Production, International Association or Food Protection – European Symposium on Food Safety, Stockholm, Sweden, Apr. 26, 2018.
Steve Ricke: “Prebiotics and the Avian Microbiome – Research Strategies and Applications”, Dept. of Pathology, Bacteriology, and Avian Diseases, Faculty of Veterinary Medicine – Merelbeke, Ghent University, Ghent, Belgium, Mar. 7, 2018.
Steve Ricke: “Probiotics in Animal Production – Historical and Current Perspectives”, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA, Feb. 2, 2018.
Chaoqun Zhu, Sreejayan Nair, Jun Ren and Wei Guo. Rbm20 Deficiency Prevents Hypertension and Heart Failure Progression by Regulating Titin Size in Smooth Muscle. 2018 Myofilament Meeting, Madison, WI, May 19th -23rd 2018. Poster# 32.
Wei Guo. Giant elastic protein titin and its splicing regulator RNA binding motif 20 in the onset and development of heart failure. 2018 Myofilament Meeting, Madison, WI, May 19th -23rd 2018. Poster# 55.
Maimaiti Rexiati, Mingming Sun and Wei Guo. RBM20 deficiency postpones skeletal muscle regeneration after injury and promotes fibrotic tissues formation. The Experimental Biology meeting, San Diego, CA., April 21-25, 2018.
Madrigal-Carballo, S,. Alfaro-Viquez, E., Esquivel-Alvarado, D., Chianelli, F., Leon, C., Krueger, C., Reed, J. Tannin-Chitosan composite materials for transdermal delivery of cannabidiol. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Madrigal-Carballo, S., Alfaro-Viquez, E., Krueger, C., Reed, J. Nanotechnology as a useful tool for polyphenol research and development. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Gullickson, E., Birmingham, A., Krueger, C., and Reed, J. The utilization of a cranberry (Vaccinium macrocarpon Ait.) proanthocyanidin standard to quantify insoluble proanthocyanidins by butanol-hydrochloric acid method. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Esquivel-Alvarado, D., Alfaro-Viquez, E., Urena-Saborio, H., Rodriguez, G., Madrigal-Carballo, S., Krueger, C., Reed, J. Characterization of Proanthocyanidin profile of tropical cranberries (Vaccinum consangunium, Vaccinum floribundum, and Vaccinum talamancense) from Costa Rica. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Esquivel-Alvarado, D., Alfaro-Viquez, E., Madrigal-Carballo, S., Krueger, C., Berres, M., Reed, J. Computer-based Polyphenol-Fingerprinting™ as innovative analytic method for proanthocyanidins authentication in natural products. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Madrigal-Carballo, S., Polewski, M., Wedde, N., Esquivel-Alvarado, D., Krueger, C., and Reed, J. Fluorescently Labeled 5-([4,6-dichlorotriazin-2-yl]amino) Fluorescein Cranberry Proanthocyanidins (DTAF-PAC) as a Tool to Understand in vitro Biological Interactions with Extra-intestinal Pathogenic Escherichia coli (ExPEC). XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Alfaro-Viquez, E., Esquivel-Alvarado, D., Polewski, M., Madrigal-Carballo, S., Krueger, C., and Reed, J. Cranberry proanthocyanidin-chitosan composite nanoparticles as potential nanoantibiotics against extra-intestinal pathogenic Escherichia coli. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Polewski, M., Wedde, N., Esquivel-Alvarado, D., Krueger, C., and Reed. J. Isolation and Characterization of Blueberry Polyphenolic Components and their Effects on Gut Barrier Function using an In Vitro Model of Gut Barrier Dysfunction. XXIX International Conference on Polyphenols and 9th Tannin Conference, July 16-20, 2018, Madison, WI
Gullickson, E., Krueger, C., Polewski, M., Wedde, N., Reed, J. (2018, September). The effect of cranberry proanthocyanidins on gut barrier function and inflammation in an in vitro cell co-culture model. Poster session presented at the 36th Annual Fall Symposium for the Wisconsin Society for Parenteral and Enteral Nutrition, Summit, WI.
Steve Ricke: “Salmonella Vaccines and the Microbiome in Poultry – A New Food Safety Paradigm”, The Korean Society of Food Hygiene and Safety, The K Hotel, Seoul, South Korea, Nov. 10, 2017.
Steve Ricke: “Foodborne Salmonella in Poultry and Food Production: Research Strategies”, William C. Frazier Lecture, Food Research Institute – Spring Meeting, Pyle Center – University of Wisconsin, Madison, WI, May 17, 2017.
Qiurong Wang, Chaoqun Zhu, John F. Odhiambo, Guadalupe L Rodríguez-González, Peter W. Nathanielsz, Stephen P. Ford, Jun Ren and Wei Guo. Maternal Obesity Compromises Mitochondrial Bioenergetic Profile of Term Fetal Sheep Heart. 64th SRI annual Scientific meeting, Orlando, FL. March 15th -18th 2017. (Selected as oral Presentation)
Wattiaux, M. A. and H. Busse. 2017. How livestock systems could better contribute to health, nutrition and sustainable livelihood in Ethiopia. 25th Annual Conference Ethiopian Society of Animal Production (ESAP) August 24-25, 2017, Haramaya Universtity, Ethiopia.
Chaoqun Zhu, Zhiyong Yin and Wei Guo. Insulin Signaling Regulates Titin Splicing through RBM20. 6th Biennial National IDeA symposium of Biomedical Research Excellence (NISBRE), Washington, DC, June 26th-28th 2016. (Received Student Travel Award)
Qiurong Wang, Chaoqun Zhu, Nan Hu, Stephen P. Ford, Petr W. Nathanielsz, Jun Ren and Wei Guo. Impact of Maternal Obesity and Overnutrition on Fetal Cardiac Function in Sheep. 63rd Annual Scientific Meeting of Society for Reproductive Investigation, Montreal, Canada, March 15-19, 2016, Abs#476.
Steve Ricke: “Developing Research Strategies for Controlling Salmonella in Food Production Systems”, Keynote Lecture –American Society for Microbiology Washington D.C. Branch and Capitol Area Food Protection Joint Fall Meeting, USDA National Agricultural Library, 10301 Baltimore Avenue, Baltimore, MD, Nov. 19, 2015.
Zhiyong Yin, Chaoqun Zhu, Jun Ren and Wei Guo. S107 improves RBM20 deficiency-induced cardiac dysfunction. 35th International Society for Heart Research-North American Section Meeting, Seattle, Washington, June 7-10, 2015, Abs#058. (Selected as Oral Presentation)
Krueger, CG, Alfaro-Viquez, E, Madrigal-Carballo, S, Reed, JD. Tannin-Chitosan Composite Nanoparticles as an Alternative to Antibiotics. 249th American Chemical Society National Meeting, March 22-26, 2015, Denver, CO
Madrigal-Carballo, S, Araya-Matey, J, Esquivel-Alvarado, D, Alfaro-Viquez, E, Krueger, CG, Reed, JD. Secondary liposomes stabilized by the electrostatic deposition of chitosan-tannin composites as potential delivery systems for proteins. 249th American Chemical Society National Meeting, March 22-26, 2015, Denver, CO
Steve Ricke: “Salmonella – Current Research and New Directions”, Hot Topics in Food Microbiology Conference, Campden BRI, Chipping Campden Glos, UK, Oct. 28, 2014.
Chaoqun Zhua, Zhiyong Yina, Jun Ren, Richard J. McCormick, Stephen P. Ford and Wei Guo. 2014. RBM20 is an essential factor for thyroid hormone-regulated titin isoform transition via the PI3K/Akt pathway. The 9th Annual ACRE/CNAHA Cardiovascular Research Symposium of American Heart Association. Abs11. (Selected as poster oral presentation and received Outstanding Presentation Award)
Zhiyong Yin, Chaoqun Zhu, Xihui Xu, Nan Hu, Jun Ren, Marion Greaser and Wei Guo. 2014. Low thyroid induces Early disruption of cardiac function in Rbm20 deficient rats. Myofilament Meeting, Madison, Wisconsin, June 7-10, 2014. (Selected as oral presentation), 7-Pos.
Chaoqun Zhu, Zhiyong Yin and Wei Guo. 2014. T3-regulated titin isoform transition is Rbm20 dependent. 5th Biennial NISBRE meeting. Washington D.C., June 16-18, 2014, 133-Pos (Highlighted Poster and Received Student Travel award)
Zhiyong Yin, Chaoqun Zhu, Xihui Xu, Jun Ren and Wei Guo. 2014. Role of Rbm20 in cardiac dysfunction induced by low thyroid function. 5th Biennial NISBRE meeting. Washington D.C., June 16-18, 2014, 135-Pos (Highlighted Poster and Received Young Investigator Travel award)
Wei Guo, Shijun Li, Sebastian Schafer, Herbert Schulz, Timothy Hacter, Hurt Saupe, Norbert Hubner, Michael Gotthardt, Marion Greaser. 2012. RBM20 regulates titin splicing, and defects result in cardiomyopathy. Myofilament Meeting, Madison, Wisconsin, June 11-15, 2012, (Selected as Oral presentation), 37-Pos.
Selected Popular Press Articles
Ricke, S.C.2016. The future of livestock nutrition and alternatives to antibiotics. 77th Minnesota Nutrition Conference Proceedings, pp. 37-45.
Baker, C.A., and S.C. Ricke. 2015. Biofilms, processing equipment, and efficacy of sanitization. Food Safety & Quality 22: 28-29.
Baker, C.A., S. H. Park, and S.C. Ricke. 2015. Salmonella poultry detection methods, advances. WATT Poultry USA 16: 30-32, 34-35
Ricke, S.C. 2014. Salmonella control from farm to fork. Food Science and Technology. 28: 27-29.
Park, S.H., S.C. Ricke and H.-Y. Kim. 2012. Bacteriophage: Alternatives for control of foodborne pathogens. Research Collection of Institute of Life Sciences & Resources Kyung Hee University, Yongin, Korea, 31: 15-19.
Alali, W., P. Crandall, K. Gibson, D. Jaroni, G. Kostandini, S. Ricke, L. Trimble, S. Angioloni, and M. L. Davis. 2012. From food safety to economics: Processing your chickens for market. APPPA Grit Nov/DecIssue 72: 6-8, 10.
Park, S.H., S.C. Ricke and H.-Y. Kim. 2012. Insight into foodborne Salmonella. Research Collection of Institute of Life Sciences & Resources Kyung Hee University, Yongin, Korea, 31: 10-14.
Ricke, S.C. 2001. Alternatives to antibiotics. pp. 58-62, In 26th Annual Poultry Service Industry Workshop, The Banff Centre, Banff, Alberta, Canada.
Ricke, S.C. 2001. The state of maturity of the probiotics industry. pp. 64-67, In 26th Annual Poultry Service Industry Workshop, The Banff Centre, Banff, Alberta, Canada.
Birkhold, K.G. Maciorowski and S.C. Ricke. 1998. Texas survey shows consumers remain wary of irradiation. Poultry & Egg Marketing Nov./Dec. 22-23.
Jones, F.T. and S.C. Ricke. 1994. Researchers propose tentative HACCP plan for feed manufacturers. Feedstuffs 66 (18): 32, 36-38, 40- 42.
Selected Research Posters
Bodie, A., P. Rubinelli, A. Englishbey, S. Forgey, T. Stephens, and S. Ricke. 2020. Comparison of media for the detection of Campylobacter jejuni using a commercial RT-PCR system. Poultry Science Association Annual Virtual Meeting, Online, July 20th – 22nd.
Dittoe, D.K., K. M. Feye, and S. Ricke. 2020. Salmonella and Campylobacter influence the microbiota response of skin-on, bone-in chicken thighs treated with different antimicrobials. Poultry Science Association Annual Virtual Meeting, Online, July 20th – 22nd.
Wages, J.A., K.M. Feye, B.J. Bench, and S.C. Ricke. 2019. Next generation sequencing of subsamples used for traditional microbiological analysis of Campylobacter in broiler carcass rinsates collected with neutralizing buffered peptone water or buffered peptone water. Poultry Science Association Annual Meeting, Montreal, Québec, Canada, July 15th – 18th.
Feye, K.M., P.M. Rubinelli, H.O. Pavlidis, J.A. Byrd, W.E. Chaney, D.R. McIntyre, and S.C. Ricke. 2019. Changes to the microbiome may mediate the anti-Salmonella effects demonstrated by XPCTM, International Poultry Scientific Forum, Atlanta, GA, Feb. 11-12th.
Feye, K.M., L. R. Meyer, H. Lekkala, D.R. Thompson and S.C. Ricke. 2018. Assessment of computer science and cybersecurity skills of undergraduate students interested in food safety. Poultry Science Association Annual Meeting, San Antonio, TX, July 22nd – 26th.
Micciche, A.C., L.M., Meyer, and S. C. Ricke. 2018. 16S rDNA-based sequencing as a rapid method to identify bacteria cultivated from nonselective aerobic plate bacterial colonies isolated from commercial poultry feed. Poultry Science Association Annual Meeting, San Antonio, TX, July 22nd – 26th.
Kim, S.A. S.H. Park, A.D. Wolfenden, B.M. Hargis, H.O. Pavlidis, D.R. McIntrye, and S.C. Ricke. 2017. Characterization of mixed bacterial populations in chicken ceca recovered from colonies on Campylobacter selective commercial media using 16S rRNA next generation sequencing. Poultry Science Association Annual Meeting, Orlando, FL, July 16th -20th.
Park, S.H., S.A. Kim, P. Rubinelli, C.A. Baker, and S.C. Ricke. 2017. Effect of Salmonella vaccine strains on broiler chicken cecal microbiota. International Assoc. Food Prot. Annual Meeting, Tampa, FL July, 9-12.
Park, S.H., S.I. Lee, and S.C. Ricke. 2016. In-depth analysis of broiler chicken gut microbiome responses over time fed a commercial yeast-based prebiotic. Amer. Soc. Microbiol. General Annual Meeting, Boston, MA, June 16-20.
Wages, J., J. Handley, S. H. Park, and S.C. Ricke. 2016. Comparison of indicator microbial populations occurring during multiple stages of commercial poultry carcass processing by conventional plating method and next generation sequencing. International Poultry Scientific Forum, Atlanta, GA, Jan. 26-27th.
Kim, S.A., S.H. Park, and S.C. Ricke. 2016. Development of a rapid method to quantify Salmonella Typhimurium using a combination of MPN and qPCR with a shortened enrichment time. International Assoc. Food Prot. Annual Meeting, St. Louis, MO, July 31st– Aug. 3rd.
Baker, C.A., S.H.Park, and S.C. Ricke. 2015.Quantification and comparison of Salmonella Typhimurium and Heidelberg biofilm formation on plastic coupons. International Assoc. of Food Protection Annual Meeting, Portland, OR.
Selected Other Publications
Ricke, S.C. (Ed.) 2020. Improving Gut Health in Poultry. Burleigh Dodd Publishing, Cambridge, UK. 522 pp
Ricke, S.C., S.H. Park, and M.L. Davis. (Eds.) 2019. Microbial Transposon Mutagenesis: Protocols and Applications. Methods and Applications. Humana Press. Springer Science, New York, NY 183 pp.
Venkitanarayanan, K., S. Thakur, and S.C. Ricke (Eds.) 2019. Food Safety in Poultry Meat Production, Springer Science, New York, NY. 301 pp.
Ricke, S.C. (Ed.) 2017. Achieving Sustainable Production of Poultry Meat- Volume 1 Safety, Quality and Sustainability. Burleigh Dodd Publishing, Cambridge, UK. 480 pp.
Ricke, S.C., G.G. Atungulu, S.H. Park, and C.E. Rainwater (Eds.) 2017. Food and Feed Safety Systems and Analysis. Elsevier Inc., San Diego, CA 406 pp.
Pei, R., D. M. DiMarco, K. K. Putt, D. A. Martin, Q. Gu, C. Chitchumroonchokchai, H. M. White, C. O. Scarlett, R. S. Bruno, and B. W. Bolling. Low-fat yogurt consumption reduces biomarkers of chronic inflammation and inhibits markers of endotoxin exposure in healthy premenopausal women: a randomised controlled trial. Brit. J. of Nutri. 118(12):1043-1051. https://doi.org/10.1017/S0007114517003038. 2017
Putt, K. K., R. Pei, H. M. White, and B. W. Bolling. Yogurt inhibits intestinal barrier dysfunction in Caco-2 cells by increasing tight junctions. Food & Funct. 8:406. https://doi.org/10.1039/C6FO01592A. 2017
Ricke, S.C. and R.K. Gast (Eds.). 2016. Producing Safe Eggs-The Microbial Ecology of Salmonella. Elsevier, Inc., San Diego, CA. 436 pp.
Ricke, S.C., J.R. Donaldson, and C.A. Phillips (Eds.) 2015. Food Safety: Emerging Issues, Technologies and Systems. Academic Press, Elsevier, Inc., Oxford, UK, 449 pp.
Ricke, S.C., E.J. Van Loo, M.G. Johnson and C.A. O’Bryan (Eds.), 2012. Organic Meat Production and Processing. Wiley Scientific/IFT, New York, NY 444 pp.
Callaway, T.R. and S.C. Ricke (Eds.), 2012. Direct Fed Microbials/Prebiotics for Animals: Science and Mechanisms of Action, Springer Science, New York, NY, 206 pp.
Kwon, Y.M. and S.C. Ricke (Eds), 2011. High-Throughput Next Generation Sequencing: Methods and Applications. Methods in Molecular Microbiology 733 – Springer Protocols, Humana Press, New York, NY 308 pp.
Ricke, S.C. and F.T. Jones (Eds), 2010. Perspectives on Food Safety Issues of Food Animal Derived Foods, University of Arkansas Press, Fayetteville, AR, 362 pp.